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Genome sequences published outside of Standards in Genomic Sciences, March–April 2012

Standards in Genomic Sciences volume 6, pages 287–292 (2012)Cite this article

Abstract

The purpose of this table is to provide the community with a citable record of publications of ongoing genome sequencing projects that have led to a publication in the scientific literature. While our goal is to make the list complete, there is no guarantee that we may have omitted one or more publications appearing in this time frame. Readers and authors who wish to have publications added to subsequent versions of this list are invited to provide the bibliographic data for such references to the SIGS editorial office.

Phylum Euryarchaeota

Halococcus hamelinensis, sequence accession PRJNA80845 [1]

“Methanocella conradii” HZ254, sequence accession CP003243 [2]

Thermococcus litoralis NS-C, sequence accession AHVB00000000 [3]

Phylum Crenarchaeota

Candidatus Nitrosopumilus salaria” BD31, sequence accession AEXL00000000 [4]

Candidatus Nitrosoarchaeum limnia, sequence accession AHJG00000000 [5]

Phylum Deinococcus-Thermus

Deinococcus gobiensis, sequence accession CP002536 [6]

Phylum Proteobacteria

Aggregatibacter actinomycetemcomitans strain ANH9381, sequence accession CP003099 [7]

Alishewanella jeotgali, sequence accession AHTH00000000 [8]

Enterobacter aerogenes KCTC 2190, sequence accession CP002824 [9]

Escherichia coli O104:H4, sequence accession AFOB02000092 [10]

Helicobacter pylori strains 17874, sequence accession PRJNA76569 [11]

Helicobacter pylori strains P79, sequence accession PRJNA76567 [11]

Janthinobacterium sp. Strain PAMC 25724, sequence accession AHHB00000000 [12]

Klebsiella oxytoca KCTC 1686, sequence accession CP003218 [13]

Klebsiella pneumoniae subsp. pneumoniae HS11286, sequence accession CP003200 (chromosome), CP003223 (plasmid pKPHS1), CP003224 (plasmid pKPHS2), CP003225 (plasmid pKPHS3), CP003226 (plasmid pKPHS4), CP003227 (plasmid pKPHS5), CP003228 (plasmid pKPHS6) [14]

Oceanimonas sp. GK1, sequence accession CP003171 [15]

“Pseudogulbenkiania ferrooxidans” Strain 2002, sequence accession NZ_ACIS01000000 [16]

Pseudomonas extremaustralis 14-3b, sequence accession AHIP00000000 [17]

Pseudomonas sp. Strain PAMC 25886, sequence accession AHHC00000000 [18]

Psychrobacter, sequence accession AHVZ00000000 [19]

Rahnella sp. Strain Y9602, sequence accession CP002505 [20]

Rhizobium sp. Strain PDO1-076, sequence accession AHZC00000000 [21]

Rhodospirillum photometricum DSM122, sequence accession HE663493 [22]

“Rickettsia sibirica sibirica”, sequence accession AHIZ00000000 [23]

Rickettsia sibirica subsp. mongolitimonae strain HA-91, sequence accession AHZB00000000 [24]

Salmonella enterica subsp. enterica Serotype Enteritidis Strain LA5, sequence accession [25]

Salmonella enterica subsp. enterica Serotype Senftenberg Strain SS209, sequence accession CAGQ00000000 [26]

Salmonella enterica subsp. enterica Serovar Typhi P-stx-12, sequence accession CP003278 (chromosome) and CP003279 (plasmid) [27]

Sphingomonas echinoides ATCC 14820, sequence accession AHIR00000000 [28]

Strain HIMB55, sequence accession AGIF00000000 [29]

Vibrio harveyi CAIM 1792, sequence accession AHHQ00000000 [30]

Wolbachia Strain wAlbB, sequence accession CAGB01000001 to CAGB01000165 [31]

Xanthomonas axonopodis pv. punicae Strain LMG 859, sequence accession CAGJ01000001 to CAGJ01000217 [32]

Phylum Tenericutes

Mycoplasma hyorhinis Strain GDL-1, sequence accession CP003231 [33]

Phylum Firmicutes

Bacillus subtilis, sequence accession BGSCID 3A27 through BGSCID 28A4 [34]

Clostridium difficile Strain CD37, sequence accession AHJJ00000000 [35]

Clostridium perfringens, sequence accession AFES00000000 [36]

Lactobacillus fructivorans KCTC 3543, sequence accession AEQY00000000 [37]

Lactococcus lactis IO-1, sequence accession AP012281 [38]

Lactobacillus plantarum strain NC8, sequence accession AGRI00000000 [39]

Paenibacillus dendritiformis C454, sequence accession AHKH00000000 [40]

Paenibacillus sp. Strain Aloe-11, sequence accession AGFI00000000 [41]

“Peptoniphilus rhinitidis” 1–13T, sequence accession BAEW01000001 to BAEW01000056 [42]

Streptococcus macedonicus ACA-DC 198, sequence accession HE613569 and HE613570 [43]

Staphylococcus aureus VC40, sequence accession CP003033 [44]

Streptococcus infantarius subsp. infantarius Strain CJ18, sequence accession CP003295 (chromosome), CP003296 (plasmid) [45]

Streptococcus macedonicus ACA-DC 198, sequence accession HE613569 (chromosome), HE613570 (plasmid pSMA198) [46]

Phylum Actinobacteria

Actinoplanes sp. SE50/110, sequence accession CP003170 [47]

Amycolatopsis sp. Strain ATCC 39116, sequence accession [48]

Nocardia cyriacigeorgica GUH-2, sequence accession FO082843 [49]

Salinibacterium sp., sequence accession AHWA00000000 [50]

Streptomyces acidiscabies 84–104, sequence accession AHBF00000000 [51]

Non-Bacterial genomes

Bluetongue Virus Serotype 2, sequence accession AJ783905 (Seg-6) and JQ681257 (Seg-1), JQ681257 (Seg-1), JQ681258 (Seg-2), JQ681259 (Seg-3), JQ681260 (Seg-4), JQ681261 (Seg-5), JQ681262 (Seg-7), JQ6812563 (Seg-8), JQ6812564 (Seg-9), to JQ681265 (Seg-10) [52]

Virus Serotype 1, sequence accession AJ585111 (Seg-2), AJ586659 (Seg-6), JQ282770 (Seg-1), JQ282771 (Seg-3), JQ282772 (Seg-4), JQ282773 (Seg-5), JQ282774 (Seg-7), JQ282775 (Seg-8), JQ282776 (Seg-9), and JQ282777 (Seg-10) [52]

Chloroplast genome of Erycina pusilla, sequence accession JF_746994 [53]

Danio rerio, sequence accession JQ434101 [54]

Enterococcal Bacteriophage SAP6, sequence accession JF731128 [55]

Eubenangee virus, sequence accession JQ070376 through JQ070385 [56]

Fujian/411-like viruses, sequence accession CY087969 to CY088568 [57]

Hantavirus Variant of Rio Mamoré Virus, Maripa Virus, sequence accession JQ611712 (segment S), JQ611713 (segment M), and JQ611714 (segment L) [58]

Pata virus, sequence accession JQ070386 through JQ070395 [59]

Porcine Circovirus 2, sequence accession JQ413808 [60]

Porcine Reproductive and Respiratory Syndrome Virus, sequence accession JQ326271 [61]

Streptococcus mutans Phage M102AD, sequence accession DQ386162 [62]

Tilligery virus, sequence accession JQ070366 through JQ070375 [63]

References

  1. Burns BP, Gudhka RK, Neilan BA. Genome Sequence of the Halophilic Archaeon Halococcus hamelinensis. J Bacteriol 2012; 194:2100–2101. PubMed http://dx.doi.org/10.1128/JB.06599-11

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  2. Lü Z, Lu Y. Complete Genome Sequence of a Thermophilic Methanogen, Methanocella conradii HZ254, Isolated from Chinese Rice Field Soil. J Bacteriol 2012; 194:2398–2399. PubMed http://dx.doi.org/10.1128/JB.00207-12

    Article  PubMed Central  PubMed  Google Scholar 

  3. Gardner AF, Kumar S, Perler FB. Genome Sequence of the Model Hyperthermophilic Archaeon Thermococcus litoralis NS-C. J Bacteriol 2012; 194:2375–2376. PubMed http://dx.doi.org/10.1128/JB.00123-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  4. Mosier AC, Allen EE, Kim M, Ferriera S, Francis CA. Genome Sequence of “Candidatus Nitrosopumilus salaria” BD31, an Ammonia-Oxidizing Archaeon from the San Francisco Bay Estuary. J Bacteriol 2012; 194:2121–2122. PubMed http://dx.doi.org/10.1128/JB.00013-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  5. Mosier AC, Allen EE, Kim M, Ferriera S, Francis CA. Genome Sequence of “Candidatus Nitrosoarchaeum limnia” BG20, a Low-Salinity Ammonia-Oxidizing Archaeon from the San Francisco Bay Estuary. J Bacteriol 2012; 194:2119–2120. PubMed http://dx.doi.org/10.1128/JB.00007-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  6. Yuan M, Chen M, Zhang W, Lu W, Wang J, Yang M, Zhao P, Tang R, Li X, Hao Y, et al. Genome Sequence and Transcriptome Analysis of the Radioresistant Bacterium Deinococcus gobiensis. Insights into the Extreme Environmental Adaptations. PLoS ONE 2012; 7:e34458. PubMed http://dx.doi.org/10.1371/journal.pone.0034458

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  7. Chen C, Kittichotirat W, Chen W, Downey JS, Bumgarner R. Genome Sequence of a Serotype B Non-JP2 Aggregatibacter actinomycetemcomitans Strain, ANH9381, from a Periodontally Healthy Individual. J Bacteriol 2012; 194:1837. PubMed http://dx.doi.org/10.1128/JB.06770-11

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  8. Jung J, Chun J, Park W. Genome Sequence of Extracellular-Protease-Producing Alishewanella jeotgali Isolated from Traditional Korean Fermented Seafood. J Bacteriol 2012; 194:2097. PubMed http://dx.doi.org/10.1128/JB.00153-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  9. Shin SH, Kim S, Kim JY, Lee S, Um Y, Oh MK, Kim YR, Lee J, Yang KS. Complete Genome Sequence of Enterobacter aerogenes KCTC 2190. J Bacteriol 2012; 194:2373–2374. PubMed http://dx.doi.org/10.1128/JB.00028-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  10. Scholl D, Gebhart D, Williams SR, Bates A, Mandrell R. Genome Sequence of E. coli O104:H4 Leads to Rapid Development of a Targeted Antimicrobial Agent against This Emerging Pathogen. PLoS ONE 2012; 7:e33637. PubMed http://dx.doi.org/10.1371/journal.pone.0033637

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  11. Clancy CD, Forde BM, Moore SA, O’Toole PW. Draft Genome Sequences of Helicobacter pylori Strains 17874 and P79. J Bacteriol 2012; 194:2402. PubMed http://dx.doi.org/10.1128/JB.00230-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  12. Kim SJ, Shin SC, Hong SG, Lee YM, Lee H, Lee J, Choi IG, Park H. Genome Sequence of Janthinobacterium sp. Strain PAMC 25724, Isolated from Alpine Glacier Cryoconite. J Bacteriol 2012; 194:2096. PubMed http://dx.doi.org/10.1128/JB.00096-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  13. Shin SH, Kim S, Kim JY, Lee S, Um Y, Oh MK, Kim YR, Lee J, Yang KS. Complete Genome Sequence of Klebsiella oxytoca KCTC 1686, Used in Production of 2,3-Butanediol. J Bacteriol 2012; 194:2371–2372. PubMed http://dx.doi.org/10.1128/JB.00026-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  14. Liu P, Li P, Jiang X, Bi D, Xie Y, Tai C, Deng Z, Rajakumar K, Ou HY. Complete Genome Sequence of Klebsiella pneumoniae Subsp. Pneumoniae HS11286, a Multidrug-Resistant Strain Isolated from Human Sputum. J Bacteriol 2012; 194:1841–1842. PubMed http://dx.doi.org/10.1128/JB.00043-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  15. Parsa Yeganeh L, Azarbaijani R, Sarikhan S, Mousavi H, Ramezani M, Amoozegar MA, Shahzadeh Fazeli A, Hosseini Salekdeh G. Complete Genome Sequence of Oceanimonas sp. GK1, a Halotolerant Bacterium from Gavkhouni Wetland in Iran. J Bacteriol 2012; 194:2123–2124. PubMed http://dx.doi.org/10.1128/JB.00023-12

    Article  PubMed Central  Google Scholar 

  16. Byrne-Bailey KG, Weber KA, Coates JD. Draft Genome Sequence of the Anaerobic, Nitrate-Dependent, Fe(II)-Oxidizing Bacterium Pseudogulbenkiania ferrooxidans Strain 2002. J Bacteriol 2012; 194:2400–2401. PubMed http://dx.doi.org/10.1128/JB.00214-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  17. Tribelli PM, Raiger Iustman LJ, Catone MV, Di Martino C, Revale S, Méndez BS, López NI. Genome Sequence of the Polyhydroxybutyrate Producer Pseudomonas extremaustralis, a Highly Stress-Resistant Antarctic Bacterium. J Bacteriol 2012; 194:2381–2382. PubMed http://dx.doi.org/10.1128/JB.00172-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  18. Shin SC, Kim SJ, Hong SG, Ahn DH, Lee YM, Lee H, Lee J, Park H. Genome Sequence of Pseudomonas sp. Strain PAMC 25886, Isolated from Alpine Glacial Cryoconite. J Bacteriol 2012; 194:1844. PubMed http://dx.doi.org/10.1128/JB.00057-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  19. Kim SJ, Shin SC, Hong SG, Lee YM, Choi IG, Park H. Genome Sequence of a Novel Member of the Genus Psychrobacter Isolated from Antarctic Soil. J Bacteriol 2012; 194:2403. PubMed http://dx.doi.org/10.1128/JB.00234-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  20. Martinez RJ, Bruce D, Detter C, Goodwin LA, Han J, Han CS, Held B, Land ML, Mikhailova N, Nolan M, et al. Complete Genome Sequence of Rahnella sp. Strain Y9602, a Gammaproteobacterium Isolate from Metal- and Radionuclide-Contaminated Soil. J Bacteriol 2012; 194:2113–2114. PubMed http://dx.doi.org/10.1128/JB.00095-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  21. Brown SD, Klingeman DM, Lu TYS, Johnson CM, Utturkar SM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA. Draft Genome Sequence of Rhizobium sp. Strain PDO1-076, a Bacterium Isolated from Populus Deltoides. J Bacteriol 2012; 194:2383–2384. PubMed http://dx.doi.org/10.1128/JB.00198-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  22. Duquesne K, Sturgis JN. Shotgun Genome Sequence of the Large Purple Photosynthetic Bacterium Rhodospirillum photometricum DSM122. J Bacteriol 2012; 194:2380. PubMed http://dx.doi.org/10.1128/JB.00168-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  23. Sentausa E, El Karkouri K, Robert C, Raoult D, Fournier PE. Sequence and Annotation of Rickettsia sibirica sibirica Genome. J Bacteriol 2012; 194:2377. PubMed http://dx.doi.org/10.1128/JB.00150-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  24. Sentausa E, El Karkouri K, Robert C, Raoult D, Fournier PE. Genome Sequence of “Rickettsia sibirica subsp. mongolitimonae.”. J Bacteriol 2012; 194:2389–2390. PubMed http://dx.doi.org/10.1128/JB.00239-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  25. Grépinet O, Rossignol A, Loux V, Chiapello H, Gendrault A, Gibrat JF, Velge P, Virlogeux-Payant I. Genome Sequence of the Invasive Salmonella enterica subsp. enterica Serotype Enteritidis Strain LA5. J Bacteriol 2012; 194:2387–2388. PubMed http://dx.doi.org/10.1128/JB.00256-12

    Article  PubMed Central  PubMed  Google Scholar 

  26. Grépinet O, Boumart Z, Virlogeux-Payant I, Loux V, Chiapello H, Gendrault A, Gibrat JF, Chemaly M, Velge P. Genome Sequence of the Persistent Salmonella enterica Subsp. Enterica Serotype Senftenberg Strain SS209. J Bacteriol 2012; 194:2385–2386. PubMed http://dx.doi.org/10.1128/JB.00255-12

    Article  PubMed Central  PubMed  Google Scholar 

  27. Ong SY, Pratap CB, Wan X, Hou S, Abdul Rahman AY, Saito JA, Nath G, Alam M. Complete Genome Sequence of Salmonella enterica subsp. Enterica Serovar Typhi P-Stx-12. J Bacteriol 2012; 194:2115–2116. PubMed http://dx.doi.org/10.1128/JB.00121-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  28. Shin SC, Kim SJ, Ahn DH, Lee JK, Park H. Draft genome sequence of Sphingomonas echinoides ATCC 14820. J Bacteriol 2012; 194:1843. PubMed http://dx.doi.org/10.1128/JB.00046-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  29. Huggett MJ, Rappé MS. Genome sequence of strain HIMB55, a novel marine Gammaproteobacterium of the OM60/NOR5 Clade. J Bacteriol 2012; 194:2393–2394. PubMed http://dx.doi.org/10.1128/JB.00171-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  30. Espinoza-Valles I, Soto-Rodríguez S, Edwards RA, Wang Z, Vora GJ, Gómez-Gil B. Draft genome sequence of the shrimp pathogen Vibrio harveyi CAIM 1792. J Bacteriol 2012; 194:2104. PubMed http://dx.doi.org/10.1128/JB.00079-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  31. Mavingui P, Valiente Moro C, Tran-Van V, Wisniewski-Dyé F, Raquin V, Minard G, Tran FH, Voronin D, Rouy Z, Bustos P, et al. Whole-Genome sequence of Wolbachia strain wAlbB, an endosymbiont of Tiger mosquito vector Aedes albopictus. J Bacteriol 2012; 194:1840. PubMed http://dx.doi.org/10.1128/JB.00036-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  32. Sharma V, Midha S, Ranjan M, Pinnaka AK, Patil PB. Genome Sequence of Xanthomonas axonopodis Pv. Punicae Strain LMG 859. J Bacteriol 2012; 194:2395. PubMed http://dx.doi.org/10.1128/JB.00181-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  33. Calcutt MJ, Foecking MF, Rosales RS, Ellis RJ, Nicholas RAJ. Genome sequence of Mycoplasma hyorhinis Strain GDL-1. J Bacteriol 2012; 194:1848. PubMed http://dx.doi.org/10.1128/JB.00033-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  34. Earl AM, Eppinger M, Fricke WF, Rosovitz MJ, Rasko DA, Daugherty S, Losick R, Kolter R, Ravel J. Whole-Genome sequences of bacillus subtilis and close relatives. J Bacteriol 2012; 194:2378–2379. PubMed http://dx.doi.org/10.1128/JB.05675-11

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  35. Brouwer MSM, Allan E, Mullany P, Roberts AP. Draft genome sequence of the Nontoxigenic Clostridium difficile Strain CD37. J Bacteriol 2012; 194:2125–2126. PubMed http://dx.doi.org/10.1128/JB.00122-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  36. Nowell VJ, Kropinski AM, Songer JG, MacInnes JI, Parreira VR, Prescott JF. Genome sequencing and analysis of a Type A Clostridium perfringens isolate from a case of bovine clostridial abomasitis. PLoS ONE 2012; 7:e32271. PubMed http://dx.doi.org/10.1371/journal.pone.0032271

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  37. Nam SH, Choi SH, Kang A, Lee KS, Kim DW, Kim RN, Kim DS, Park HS. Genome sequence of Lactobacillus fructivorans KCTC 3543. J Bacteriol 2012; 194:2111. PubMed http://dx.doi.org/10.1128/JB.00075-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  38. Kato H, Shiwa Y, Oshima K, Machii M, Araya-Kojima T, Zendo T, Shimizu-Kadota M, Hattori M, Sonomoto K, Yoshikawa H. Complete genome sequence of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of L-Lactic acid. J Bacteriol 2012; 194:2102–2103. PubMed http://dx.doi.org/10.1128/JB.00074-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  39. Axelsson L, Rud I, Naterstad K, Blom H, Renckens B, Boekhorst J, Kleerebezem M, Van Hijum S, Siezen RJ. Genome sequence of the naturally plasmid-free Lactobacillus plantarum strain NC8 (CCUG 61730). J Bacteriol 2012; 194:2391–2392. PubMed http://dx.doi.org/10.1128/JB.00141-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  40. Sirota-Madi A, Olender T, Helman Y, Brainis I, Finkelshtein A, Roth D, Hagai E, Leshkowitz D, Brodsky L, Galatenko V, et al. Genome sequence of the pattern-forming social bacterium Paenibacillus dendritiformis C454 chiral morphotype. J Bacteriol 2012; 194:2127–2128. PubMed http://dx.doi.org/10.1128/JB.00158-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  41. Li NZ, Xia T, Xu YL, Qiu RR, Xiang H, He D, Peng YY. Genome sequence of Paenibacillus sp. strain aloe-11, an endophytic bacterium with broad antimicrobial activity and intestinal colonization ability. J Bacteriol 2012; 194:2117–2118. PubMed http://dx.doi.org/10.1128/JB.00087-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  42. Kim DS, Jung MY, Kang A, Cho J, Sin Y, Paek J, Kim DW, Kim RN, Nam SH, Kim A, et al. Genome sequence of Peptoniphilus rhinitidis 1–13T, an anaerobic coccus strain isolated from clinical specimens. J Bacteriol 2012; 194:2405–2406. PubMed http://dx.doi.org/10.1128/JB.00192-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  43. Papadimitriou K, Ferreira S, Papandreou NC, Mavrogonatou E, Supply P, Pot B, Tsakalidou E. Complete genome sequence of the dairy isolate Streptococcus macedonicus ACA-DC 198. J Bacteriol 2012; 194:1838–1839. PubMed http://dx.doi.org/10.1128/JB.06804-11

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  44. Sass P, Berscheid A, Jansen A, Oedenkoven M, Szekat C, Strittmatter A, Gottschalk G, Bierbaum G. Genome sequence of Staphylococcus aureus VC40, a vancomycin- and daptomycin-resistant strain, to study the genetics of development of resistance to currently applied last-resort antibiotics. J Bacteriol 2012; 194:2107–2108. PubMed http://dx.doi.org/10.1128/JB.06631-11

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  45. Jans C, Follador R, Lacroix C, Meile L, Stevens MJA. Complete genome sequence of the african dairy isolate Streptococcus infantarius subsp. infantarius Strain CJ18. J Bacteriol 2012; 194:2105–2106. PubMed http://dx.doi.org/10.1128/JB.00160-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  46. Papadimitriou K, Ferreira S, Papandreou NC, Mavrogonatou E, Supply P, Pot B, Tsakalidou E. Complete genome sequence of the dairy isolate Streptococcus macedonicus ACA-DC 198. J Bacteriol 2012; 194:1838–1839. PubMed http://dx.doi.org/10.1128/JB.06804-11

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  47. Schwientek P, Szczepanowski R, Ruckert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Puhler A. The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics 2012; 13:112. PubMed http://dx.doi.org/10.1186/1471-2164-13-112

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  48. Davis JR, Goodwin LA, Woyke T, Teshima H, Bruce D, Detter C, Tapia R, Han S, Han J, Pitluck S, et al. Genome sequence of Amycolatopsis Sp. Strain ATCC 39116, a plant biomass-degrading actinomycete. J Bacteriol 2012; 194:2396–2397. PubMed http://dx.doi.org/10.1128/JB.00186-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  49. Zoropogui A, Pujic P, Normand P, Barbe V, Beaman B, Beaman L, Boiron P, Colinon C, Deredjian A, Graindorge A, et al. Genome sequence of the human- and animal-pathogenic strain Nocardia cyriacigeorgica GUH-2. J Bacteriol 2012; 194:2098–2099. PubMed http://dx.doi.org/10.1128/JB.00161-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  50. Shin SC, Kim SJ, Ahn DH, Lee JK, Lee H, Lee J, Hong SG, Lee YM, Park H. Genome sequence of a Salinibacterium sp. isolated from antarctic soil. J Bacteriol 2012; 194:2404. PubMed http://dx.doi.org/10.1128/JB.00235-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  51. Huguet-Tapia JC, Loria R. Draft genome sequence of Streptomyces acidiscabies 84–104, an emergent plant pathogen. J Bacteriol 2012; 194:1847. PubMed http://dx.doi.org/10.1128/JB.06767-11

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  52. Maan NS, Maan S, Guimera M, Pullinger G, Singh KP, Nomikou K, Belaganahalli MN, Mertens PPC. Complete genome sequence of an isolate of Bluetongue Virus Serotype 2, demonstrating circulation of a western topotype in southern India. J Virol 2012; 86:5404–5405. PubMed http://dx.doi.org/10.1128/JVI.00420-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  53. Pan IC, Liao DC, Wu FH, Daniell H, Singh ND, Chang C, Shih MC, Chan MT, Lin CS. Complete chloroplast genome sequence of an orchid model plant candidate. Erycina pusilla apply in tropical Oncidium breeding. PLoS ONE 2012; 7:e34738. PubMed http://dx.doi.org/10.1371/journal.pone.0034738

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  54. Voz ML, Coppieters W, Manfroid I, Baudhuin A, Von Berg V, Charlier C, Meyer D, Driever W, Martial JA, Peers B. Fast homozygosity mapping and identification of a zebrafish ENU-induced mutation by whole-genome sequencing. PLoS ONE 2012; 7:e34671. PubMed http://dx.doi.org/10.1371/journal.pone.0034671

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  55. Lee YD, Park JH. Complete genome sequence of enterococcal bacteriophage SAP6. J Virol 2012; 86:5402–5403. PubMed http://dx.doi.org/10.1128/JVI.00321-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  56. Belaganahalli MN, Maan S, Maan NS, Nomikou K, Pritchard I, Lunt R, Kirkland PD, Attoui H, Brownlie J, Mertens PPC. Full genome sequencing and genetic characterization of Eubenangee viruses identify pata virus as a distinct species within the genus Orbivirus. PLoS ONE 2012; 7:e31911. PubMed http://dx.doi.org/10.1371/journal.pone.0031911

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  57. Galiano M, Johnson BF, Myers R, Ellis J, Daniels R, Zambon M. Fatal cases of influenza A(H3N2) in children. Insights from whole genome sequence analysis. PLoS ONE 2012; 7:e33166. PubMed http://dx.doi.org/10.1371/journal.pone.0033166

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  58. Matheus S, Lavergne A, De Thoisy B, Dussart P, Lacoste V. Complete genome sequence of a novel Hantavirus variant of Rio Mamoré virus, Maripa virus, from French Guiana. J Virol 2012; 86:5399. PubMed http://dx.doi.org/10.1128/JVI.00337-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  59. Belaganahalli MN, Maan S, Maan NS, Nomikou K, Pritchard I, Lunt R, Kirkland PD, Attoui H, Brownlie J, Mertens PPC. Full genome sequencing and genetic characterization of Eubenangee viruses identify pata virus as a distinct species within the genus Orbivirus. PLoS ONE 2012; 7:e31911. PubMed http://dx.doi.org/10.1371/journal.pone.0031911

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  60. Li B, Ma J, Liu Y, Wen L, Yu Z, Ni Y, Zhang X, Zhou J, Guo R, Wang X, et al. Complete genome sequence of a highly prevalent Porcine Circovirus 2 isolated from piglet stool samples in China. J Virol 2012; 86:4716. PubMed http://dx.doi.org/10.1128/JVI.00268-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  61. Song T, Fang L, Zeng S, Li B, Chen H, Xiao S. Complete senome sequence of porcine reproductive and respiratory syndrome virus isolated from piglet stool samples. J Virol 2012; 86:4040–4041. PubMed http://dx.doi.org/10.1128/JVI.00055-12

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  62. Delisle AL, Guo M, Chalmers NI, Barcak GJ, Rousseau GM, Moineau S. Biology and genome sequence of Streptococcus mutans phage M102AD. Appl Environ Microbiol 2012; 78:2264–2271. PubMed http://dx.doi.org/10.1128/AEM.07726-11

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  63. Belaganahalli MN, Maan S, Maan NS, Nomikou K, Pritchard I, Lunt R, Kirkland PD, Attoui H, Brownlie J, Mertens PPC. Full genome sequencing and genetic characterization of Eubenangee viruses identify Pata virus as a distinct species within the genus Orbivirus. PLoS ONE 2012; 7:e31911. PubMed http://dx.doi.org/10.1371/journal.pone.0031911

    Article  PubMed Central  CAS  PubMed  Google Scholar 

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  1. Editorial Office, Standards in Genomic Sciences and Department of Microbiology, Michigan State University, East Lansing, MI, USA

    Oranmiyan W. Nelson & George M. Garrity

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Nelson, O.W., Garrity, G.M. Genome sequences published outside of Standards in Genomic Sciences, March–April 2012. Stand in Genomic Sci 6, 287–292 (2012). https://doiorg.publicaciones.saludcastillayleon.es/10.4056/sigs.2836114

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Environmental Microbiome

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