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Table 2 Number of coding sequences in MAGs associated to the plant-beneficial functions shown as enriched in metagenomic analyses by comparing the untreated Chardonnay at flowering (in absence of symptoms of P. viticola) and Veraison (in presence of symptoms of P. viticola). Gray cells indicate the functions enriched in the conditions the microorganisms are originated from (CNT = untreated Chardonnay; CT = treated Chardonnay; VOL = Voltis; F = Flowering; V = Veraison). Only functions supposed to be related to plant protection were searched. The functions not shown in the table were not found. A coding sequence was count when the gene of interest (*) or the associated product was observed

From: Diversity and functional features of the root-associated bacteriome are dependent on grapevine susceptibility to Plasmopara viticola

 

Gene

potA

puuA

ABC.SP.P ydcV

ABC.SP.P1 ydcU

ABC.SP.S ydcS

 

KEGG

K11072

K09470

K02053

K02054

K02055

Genus

Enriched at:

Flowering

Flowering

Flowering

Flowering

Flowering

Nitrosopumilales

CNTV_Bin7

     

Nitrosopumilales

CTV_Bin3

     

Flavobacterium

CNTV_Bin5

     

Shingobacterium

CNTF_Bin35

     

Shingobacterium

CTF_Bin39

     

Phyllobacterium

CNTF_Bin24

3*

 

2

2

2

Phyllobacterium

CNTF_Bin39

7*

 

8

8

2

Phyllobacterium

CTF_Bin18

2*

 

2

2

2

Agrobacterium

CTF_Bin22

4*

 

2

2

2

Cutibacterium

VOLF_Bin13

     

Novosphingobium

CNTV_Bin25

     

Paraburkholderia

VOLF_Bin15

8*

 

12

12

6

Pseudomonas

CNTF_Bin20

3*

1*

1

1

 

Pseudomonas

CTF_Bin33

3*

 

4

4

1

Variovorax

CTV_Bin11

2*

 

11

11

5

Acidovorax

CNTV_Bin9

2*

 

4

4

1